In JBrowse 2 there are multiple ways to obtain sequence information. One is via a context menu when region is selected by clicking and dragging on the “number line” part of the linear genome view:
Selecting “Get sequence” from the context menu will open a dialog where you will have a few options for how to get your sequence:
Only 10 days left to apply to our practical hands-on training course in helminth genome analysis (#HelminthBio23) organised by @stephenrdoyle@akoiwang! FREE to attend & travel bursaries are available to Asia-based applicants!
–The WormBase ParaSite team
The new genome browser software is a live, in-page genome browser that you can add tracks to, pan, zoom and do a variety of things JBrowse 1 could do without leaving the page. If you’d like a full page JBrowse 2, you can click on the link just above the genome browser, or if you’d like to use JBrowse 1, you can click on the “Legacy” link just below JBrowse 2 to get the old JBrowse 1 image and link back. Please let us know if you have any comments or questions by writing to help@wormbase.org.
The GSA hosted talks–“Mining model organism data in the Alliance of Genome Resources Portal” by Paul Sternberg (Caltech) and Monte Westerfield (University of Oregon) are now available for viewing.
The IWM 2021 WormBase workshop is now available to view here, on our YouTube channel.