Change in gene summaries for WS294

A gene summary is a brief description of the key functional aspects of a gene and appears in the “Overview” widget of every gene page in WormBase. Recently we changed the rules for inclusion of data such as large scale expression cluster data and protein domain data in gene summaries. When functional data as represented by Gene Ontology (GO) process, function or cellular component annotations are available for a gene, these are used to generate a gene summary. When no GO annotations are available for a gene, then functional data from the orthologous human gene is included in the gene summary. Further, if no tissue or cellular expression is available for the gene, expression cluster and protein domain data are included in the gene summary. Please see the microPublication that describes these updates to the gene summaries for C. elegans and other nematodes in the WS294 release of WormBase.

New Alliance version recently released

Check out the new release (version 7.4.0) of the Alliance of Genome Resources (Alliance). A notable feature of this release is that it includes ~2.5 million variants of clinical significance from ClinVar! To learn more about this release see the Release Notes.

WormBase WS293 released with balancers now available in SimpleMine

The WormBase website has been updated to the WS293 release (check out the release notes for details). This release features the addition of balancers to SimpleMine! Now you can find balancers and their reference strains for a list of C. elegans genes under the “Genetics, Interactions and Phenotypes” menu.

Check out the new Alliance release!

The new 7.1.0 version of the Alliance of Genome Resources (Alliance) was recently released. You can find harmonized data related to your favorite model organism together with other model organism data. Find details about this release here. We’d love to hear from you, so send us your comments and suggestions.

New Alliance release available

Check out the new Alliance release 7.0.0. To learn more about this release please see the release notes.

If you don’t already know about the Alliance of Genome Resources (Alliance), it is a consortium of 7 model organism databases (MODs) and the Gene Ontology (GO) Consortium whose goal is to provide an integrated view of their data to all biologists, clinicians and other interested parties. You can look at harmonized C. elegans data such as disease model annotations in the context of other species. You can find ortholog data easily right on a gene page. Note that we are in the process of transitioning data types from WormBase to the Alliance and building data displays for these data, so not all WormBase data is available at the Alliance yet.