New in WS246: Automatically generated gene descriptions

WormBase has been writing concise descriptions of genes that appear in the Overview widget of the gene page. Written in prose, these descriptions provide a quick overview of gene function. Since the process of manually writing gene descriptions is a relatively slow process, many genes lacked such descriptions.

A new experimental tool at WormBase aims to fill these gaps by automatically creating gene descriptions which are visible in the Overview widget of gene pages.  The semi-automated process of generating these descriptions relies on pre-existing orthology and Gene Ontology annotations (biological process, molecular function, and cellular component) in WormBase.  This process offers a broad coverage for genes lacking manually drafted descriptions.

New Features for WS246

Human Disease Data Update

As part of WormBase efforts to curate genes that are potential models for inherited human diseases, 867 genes have been predicted as potential disease genes. In addition curation efforts added publications on experiments using C.elegans genes to investigate human genetic diseases to 181 genes. And 244 genes have been identified from publications as being relevant to research in that field.

WormBase curates human disease relevance data by designating genes as ‘Experimental models’ for a specific human disease based on experimental data published in the literature. In addition to manual curation, an automated data pipeline designates genes as ‘Potential models’ based on orthology with the human gene. Detailed text descriptions called ‘Human disease relevance’ descriptions describe how the elegans gene is a genetic model for the human disease. All human disease relevant data can be found in the ‘Human Diseases’ widget and in the ‘Overview’ section on gene pages.

WormBase Service Interruption: 25 December 2014 [complete]

In order to perform service and security upgrades, WormBase will be operating at reduced capacity and be periodically unavailable between the hours of 12PM to 4PM ET (GMT -5). We apologize in advance for the inconvenience.

The upgrade has been completed. All services are now back online. We apologize for the disruption.

IWM2015 Workshop Proposals deadline approaching

Proposals are being solicited for the 20th International C. elegans Meeting. Workshops can be based on a specific scientific area, a technical approach applicable to various research topics, community resources, educational issues, or other topics of interest to the worm community. The deadline for submissions is November 15, 2014.