A HMMER based software for identifying transcription factor binding
sites in C. elegans and C. briggsae. Read user
manual (PDF file) and run program.

The Genome Browser now generates publication-quality images in the
Scalable Vector Graphics (SVG) format. SVG images can be resized with
no loss in quality and edited in vector-based graphics applications.
Follow the Publication
Quality Image link from the main Genome
Browser page for additional information.

CisOrtho is a software
pipeline for finding binding sites for transcription factors, based on
a user-defined set of known binding sites. Please comment.

BLAST servers for the C. briggsae genomic and protein data sets
are now available on the blast search
page.

The display of the C. elegans physical (cosmid fingerprint) map
is now easier to get to. You can access it from the “Physically
Mapped Clones” link of the gene page, or directly by searching for a
cosmid name and going to the clone page.