Check out the new release (version 7.4.0) of the Alliance of Genome Resources (Alliance). A notable feature of this release is that it includes ~2.5 million variants of clinical significance from ClinVar! To learn more about this release see the Release Notes.
WormBase WS293 released with balancers now available in SimpleMine
The WormBase website has been updated to the WS293 release (check out the release notes for details). This release features the addition of balancers to SimpleMine! Now you can find balancers and their reference strains for a list of C. elegans genes under the “Genetics, Interactions and Phenotypes” menu.
Check out the new Alliance release!
The new 7.1.0 version of the Alliance of Genome Resources (Alliance) was recently released. You can find harmonized data related to your favorite model organism together with other model organism data. Find details about this release here. We’d love to hear from you, so send us your comments and suggestions.
New Alliance release available
Check out the new Alliance release 7.0.0. To learn more about this release please see the release notes.
If you don’t already know about the Alliance of Genome Resources (Alliance), it is a consortium of 7 model organism databases (MODs) and the Gene Ontology (GO) Consortium whose goal is to provide an integrated view of their data to all biologists, clinicians and other interested parties. You can look at harmonized C. elegans data such as disease model annotations in the context of other species. You can find ortholog data easily right on a gene page. Note that we are in the process of transitioning data types from WormBase to the Alliance and building data displays for these data, so not all WormBase data is available at the Alliance yet.
For miRNA fans
For miRNA fanatics out there, we have added 90 miRNA gene clusters from MirGeneDB to the C. elegans annotation in release WS284. This complements the 20 clusters (800 objects) which were already there, making the WormBase miRNA collection possibly the most complete in the world. You can access the miRNAs through the web pages https://wormbase.org/search/all/miRNA, or through JBrowse tracks “Curated Genes(noncoding)” e. g. And don’t forget WormBase also has an impressive collection of other non-coding RNAs as well; circRNAs, lincRNAs, piRNAs, snRNA, snoRNAs, precursors and many more. Happy investigating!