“Understanding Worm and Fly Transcription Factor binding Data”
This online webinar will introduce participants to the data obtained in studies of binding sites for various transcription factors in D. melanogaster and C. elegans
and describe how to visualize and download these data from the modENCODE web site. Space is limited so advance registration is necessary. Please email help@modencode.org to reserve your spot. More details and the schedule are available on the modENCODE Wiki.
modENCODE papers published
Results from the modENCODE project have now been published. Integrative Analysis of the C. elegans Genome in Science provides an in-depth overview accompanied by multiple companion papers in Genome Biology and Genome Research. See the full list of papers on M9: The WormBase Blog.
Full list of modENCODE C. elegans papers
Here’s a quick list of recently published modENCODE C. elegans papers:
Science
Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project.
Science 24 December 2010: Vol. 330 no. 6012 pp. 1775-1787
DOI: 10.1126/science.1196914
Genome Research
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.113050.110
A global analysis of C. elegans trans-splicing
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.113811.110
Broad chromosomal domains of histone modification patterns in C. elegans
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.115519.110
Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.114587.110
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.115931.110
Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome
Genome Res. Published in Advance December 22, 2010
doi:10.1101/gr.108845.110
Genome-wide analysis of alternative splicing in Caenorhabditis elegans
Genome Res. gr.114645.110 Published in Advance December 22, 2010
doi:10.1101/gr.114645.110
A Spatial and Temporal Map of C. elegans Gene Expression
Genome Res. gr.114595.110 Published in Advance December 22, 2010
doi:10.1101/gr.114595.110
Prediction and characterization of non-coding RNAs in C. elegans by integrating conservation, secondary structure and high throughput sequencing and array data
Genome Res. gr.110189.110 Published in Advance December 22, 2010
doi:10.1101/gr.110189.110
modENCODE data now available at WormBase
The WormBase genome browser now contains over 100 tracks of functional data from the ModENCODE Project. Please visit ModENCODE to search and download the underlying data sets.
New release of the database: WS214
WormBase has been updated to the WS214 release of the database. New in this release: data from the modENCODE Project, available as tracks on the C. elegans Genome Browser.