Call for nominations for a Worm Board

Dear Worm Community,

Following discussions at the 2015 International Worm Meeting it is apparent that there is a need for a group to support community resources and infrastructure. Here we announce the formation of a Worm Board. An ‘Interim Worm Board’, listed below, has drawn up a Charter (appended) and will hold elections for the first Worm Board.

We plan to hold the first elections in early 2016. We now ask for nominations for President, officers and regional representatives to begin terms from Spring 2016. The President-elect would serve as an officer for the first year, then become President in Spring 2017. Andrew Chisholm has agreed to serve as first President until Spring 2017, to oversee the initial stages of WormBoard.

Feel free to nominate anyone (including yourself). Nominees must be willing and able to serve a three-year term, if elected. All lab heads associated with a CGC laboratory designation will be eligible to vote. Nominations for officers can be sent to any member of the Interim Board; nominations for regional representatives should be sent to the current regional representative. The closing date for nominations will be December 31st.

Worm Board is a new way of organizing our community efforts, but is based on structures that have worked well for other genetic model organisms. For Worm Board to be effective it must have the support of the community. We welcome any feedback on this new venture; please nominate, and vote!

Interim Worm Board

Interim officers:

Julie Ahringer

Andrew Chisholm

Anne Hart

Oliver Hobert

Interim regional representatives:

US/East: Jane Hubbard (New York University)

US/Central/South: David Greenstein (University of Minnesota)

US/West: Miriam Goodman (Stanford)

Predominantly Undergraduate Institutions: Te-wen Lo (Ithaca College)

Canada and Americas: Brent Derry (Toronto)

Europe including UK (2): Peter Meister (U of Bern) and Ralf Sommer (Tuebingen)

Asia/Australasia/Oceania (2): Asako Sugimoto (Tohoku U) and Hong Zhang (CAS Beijing)

Ex officio members:

GSA liaison: Anne Villeneuve

PI of WormBase Consortium: Paul Sternberg

Director of the CGC: Ann Rougvie

elegans nomenclature coordinator: Tim Schedl

WormBook Editor-in-Chief: Iva Greenwald

PIs of the gene knockout consortia: Don Moerman, Shohei Mitani

PIs of nematode genome projects: Mark Blaxter

Current and most recent International Worm Meeting organizers: Andrew Chisholm and Marie-Anne Felix (2017); Benjamin Podbilewicz and Gillian Stanfield (2015)

Worm Board Charter

Preamble

Since its inception the C. elegans field has relied on the voluntary efforts of community-minded individuals to develop and organize key resources and meetings. As the field enters its second half-century, continued growth necessitates a more formal structure for such efforts. The Worm Board has been formed to advocate for C. elegans research internationally and to foster the continued development of community resources.

Composition of WormBoard

The WormBoard is a representative group of working scientists and educators who use C. elegans or related nematodes as their primary model organism. WormBoard will meet in odd-numbered years at the biennial International C. elegans meeting, and if possible at one of the topic or regional meetings in even-numbered years. Additional business will be conducted by email or teleconference.

Officers (total 4)

Worm Board will have four officers: A President, a President-elect, a Secretary, and an Election manager. An election held at the end of each year will chose a President-elect, who will serve as an officer the first year, then be President the second year. To ensure continuity in the Board, the President will then serve in officer positions for two additional years, first as “Secretary”, then “Election manager”.

Regional Representatives (total 9)

The regional representatives will be selected by votes of the respective communities in these regions. Regional representatives serve for a period of three years. Terms of office for the Officers and the Regional Representatives begin and end at the Board meetings in the summer. Regions are represented as follows: US/East (1); US/Central and South (1); US/West (1); Canada and Americas (1); Europe (including UK) (2); Asia/Australasia/Oceania (2); a representative of Predominantly Undergraduate Institutions (1). Representation of regions is based on approximate number of active labs and will be periodically reviewed.

Ex officio members

The following individuals or their representatives will serve on the Board as non-voting ex officio members, and may also serve as voting officers or regional representatives, if elected:

Liaison with the Genetics Society of America (a GSA board member, if available).

The PI of the WormBase consortium

The Director of the CGC

The C. elegans nomenclature coordinator.

The editor of WormBook

The PIs of the gene knockout consortium projects.

One PI of nematode genome projects

Current and most recent International Worm Meeting organizers.

WormBoard’s discussion of community issues benefits from input from the entire community. The regional representatives are responsible for canvassing C. elegans researchers from their regions on major issues. Advice from ex officio members will also be solicited on all Board issues. The Officers and the Regional Representatives, as the elected officials of the Board, constitute its voting body.

Elections

The Elections Manager is responsible for organizing the election of the Officers. Each Regional representative will serve on a nomination subcommittee and be responsible for overseeing the election of their replacement. Nominees may be proposed by the community, or be self-nominated. If there are insufficient nominations, current WormBoard members will propose nominees for each position, chosen to represent of the diversity of C. elegans researchers. Nominees must agree to be willing to serve their full terms on WormBoard. Elections will be held in December-January. Newly elected Representatives begin their term the following spring and participate in the WormBoard Meeting at the summer meeting.

Responsibilities of WormBoard

 1. To advocate for C. elegans research and represent the interests of the worldwide C. elegans scientific community.

2. To gather input, discuss, and articulate strategic goals for the C. elegans community, including a ‘White paper’ summary at regular intervals.

3. To support international cooperation and communication among C. elegans researchers.

4. To act as a liaison with other communities and scientific societies with related interests.

5. To ensure a successful International C. elegans Meeting. The Board will approve the venue and appoint the Scientific Organizers. The Board will also support the Topic and Regional meetings in alternating years, as well as other community activities.

6. To promote the relevance of C. elegans research to human health, both in fundamental discovery and in biomedical or disease modeling.

7. To promote C. elegans investigators for honors, awards, and prizes

8. To promote public outreach, educational initiatives, programs, or forums, and to support the use of C. elegans in biology education.

9. To promote the generation, maintenance, and advancement of infrastructure projects valuable to the international C. elegans community, including: the WormBase consortium, WormBook, the Caenorhabditis Genetics Center, the C. elegans gene knockout consortia, and nematode genome sequencing projects.

10. In the event that any unspent funds are available, to the Board will develop plans to administer them for the benefit of the C. elegans research community.

Prepared by Andrew Chisholm (UCSD), 12/15/15.

REMINDER!! – Gene Ontology (GO) Survey – Closes Sunday, November 15th

Attention GO users!!  The Gene Ontology Consortium would love to hear your feedback about GO.  Please assist the GO project by completing a short survey. The results will help us learn more about how you use GO, how GO can serve your research needs better, and will aid in preparation for the upcoming GO grant renewal. Surveys completed by November 15th 2015 will be eligible for a prize drawing for a $400 Apple Store voucher.  Thanks in advance for your time!

Announcement of WormBook in GENETICS

From: Iva Greenwald, Dept. of Biological Sciences, Columbia University.

As Marty Chalfie announced in his WBG article, I have succeeded him as Editor-in-Chief of WormBook. I want to express my gratitude to everyone that Marty mentioned in his article who made WormBook possible and I want to add, on behalf of the entire worm community, our thanks to Marty for his vision and leadership in making WormBook an invaluable resource for all of us.

My first task as Editor-in-Chief designate was to follow up on Marty’s initiative to partner with the Genetics Society of America to publish new content for WormBook in GENETICS.

I am pleased to announce that this partnership has now been established. GENETICS will publish about 50 new reviews spanning the breadth of C. elegans research over the course of about four years.  The chapters will be comprehensive summaries that will introduce novices to the key tenets and methodologies of the field and also serve as authoritative references for experts. The GENETICS content will complement and extend existing WormBook chapters that will be kept available at Caltech via WormBase.

I want to thank Paul Sternberg and Oliver Hobert for many contributions to the discussions with GENETICS and for continuing to serve in an advisory capacity as we proceed. I also want to thank Marty for initiating the relationship and for sharing his unique perspective on going forward.

Because of reductions in funds to WormBase, additional new chapters or “updates” will not be solicited for the Caltech site, although over the course of the next year you will see several new/updated chapters published there that had been previously commissioned.  I am indebted to Jane Mendel, the current Section Editors, and the production team at Caltech for continuing to oversee these ongoing chapters to completion.

I am especially grateful to the many colleagues who advised in the planning of WormBook in GENETICS or are serving as Section Editors to make it happen.  We look forward to the contributions of many more colleagues as authors and reviewers, and trust that together, we will all ensure that this project both represents and serves the needs of our entire community.

Here is the masthead.

Editor-inChief:  Iva Greenwald

Advisory Board:  Monica Driscoll, Pierre Gonczy, Oliver Hobert, Tim Schedl, Paul Sternberg.

Sections and Section Editors:

1. Gene and Genome Regulatory Mechanisms: John Kim and Susan Strome

2. Cell Fate, Signaling and Development: Meera Sundaram and Geraldine Seydoux

3. Metabolism, Physiology and Aging: Monica Driscoll and Adam Antebi

4. Cell and Organelle Biology: Michel Labouesse and Barth Grant

5. Neurobiology and Behavior: Piali Sengupta and Yuichi Iino

6. Evolution and Ecology: Marie-Anne Felix and Asher Cutter

7. WormMethods:  Oliver Hobert and Hannes Bülow

Gene Ontology (GO) Survey

Attention GO users!!  The Gene Ontology Consortium would love to hear your feedback about GO.  Please assist the GO project by completing a short survey. The results will help us learn more about how you use GO, how GO can serve your research needs better, and will aid in preparation for the upcoming GO grant renewal. Surveys completed by November 15th 2015 will be eligible for a prize drawing for a $400 Apple Store voucher.  Thanks in advance for your time!

ParaSite Release 3

We are pleased to announce the third release of WormBase ParaSite, the home for parasitic worm draft genomes and genomic data in WormBase.

This release includes two new annotated genomes, taking the total number of nematode and flatworm genomes in WormBase ParaSite to 99, representing 90 species. The new genomes are:

  • Echinococcus canadensis (PRJEB8992)
  • Loa loa (PRJNA246086)

This release also includes a REST API, providing language-neutral programmatic access to ParaSite data via a RESTful interface (http://parasite.wormbase.org/api/), and an improved BLAST search which is faster and has no limit on the number of species that can be BLASTed against (http://parasite.wormbase.org/Tools/Blast).

Finally, in this release we are displaying tapeworm RNASeq data for the species Echinococcus granulosus, Echinococcus multilocularis and Hymenolepis microstoma (as example). We will be including more transcriptomic data sets in upcoming ParaSite releases so if you would like to suggest datasets you would like to see displayed please get in touch!