Bursaphelenchus xylophilus on WormBase

The newly published Bursaphelenchus xylophilus (Kikuchi et.al) is as of WS229 available at WormBase including it’s gene set. The data are available as GFF3 and FASTA files for download, and has been added to GBrowse and BLAST.

Bursaphelenchus xylophilus is a pine parasite causing considerable economic damage and can give insights into evolution of plant parasites by comparing it, for example, to Meloidogyne.

ModENCODE Data Access Webinar, Feb 2nd, 2012

The next webinar held by the Data Coordination Center for modENCODE is scheduled for Thursday Feb 2, 12:00 EST. Topic: “Using modENCODE tools: GBrowse and modMINE”. This webinar will discuss the web tools for data retrieval and analysis – data mining interface (modMINE) and genome browser (GBrowse) — both accessible via mod.encode.org. Space is limited so advance registration is necessary. Please email [email protected] to reserve your spot. More details and the schedule are available on the modENCODE Wiki.

WormBase seeks a Biological Curator

WormBase at Caltech (at Pasadena, CA, USA) currently has seven full-time biological curators as well as several bioinformaticians and software developers. The Caltech group annotates gene expression patterns, gene regulation, functional descriptions, phenotypes, microarray data, cell functions, and protein and gene interactions.  We continually try to obtain, store and display whatever information has become most relevant to our community.

We are seeking an individual with substantial C. elegans experience to help analyze gene functions and interactions and incorporate them into WormBase.  Curation places a premium on broad scientific knowledge, excellent communication skills, and creative intelligence, as well as on patience and hard work.  Computer literacy in UNIX or Linux and in Perl is a plus, but is not required, since curators have the opportunity to develop their skills in bioinformatics at Caltech.  While demanding high skill and willingness to serve others, biological curation at Caltech also offers rewards beyond that of a postdoc, one of which is a wide range of future job prospects: biologists who become curators can remain at the forefront of research, and also have the option to move to bioinformatics. A curator’s salary is higher than most postdoc’s, and the general quality of life in Pasadena and Caltech is good. Curators at Caltech work in an excellent academic environment, where they can interact with several laboratories carrying out genomics both at Caltech itself and at affiliated institutions.

Please contact Paul Sternberg ([email protected]) for more information.